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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11417 and 11418 are separated by 374 nucleotides
11418 and 11419 are separated by 667 nucleotides
11419 and 11420 are separated by 494 nucleotides
11420 and 11421 are separated by 699 nucleotides
mRNA_3049: 11417 - SUPERFAMILY--SSF50685, at 190,757 to 193,605
11417
mRNA_3050: 11418 - K14430 PHO87_91 phosphate transporter, at 193,980 to 198,261
11418
mRNA_3051: 11419 - Hypothetical Protein, at 198,929 to 201,085
11419
mRNA_3052: 11420 - KOG2404 Fumarate reductase, flavoprotein subunit, at 201,580 to 204,661
11420
mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205,361 to 206,848
11421
Group
Condition
mRNA
_3049
mRNA
_3050
mRNA
_3051
mRNA
_3052
mRNA
_3053
11417
11418
11419
11420
11421
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.7
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.9
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.7
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.0
-0.2
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.7
-0.3
-0.4
auxotrophy
Dropout Complete
N.D.
N.D.
+0.4
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.2
-0.4
+0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-0.2
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.2
-0.1
+0.2
growth on ypd
YPD
N.D.
N.D.
+0.7
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.6
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.5
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.4
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.6
-0.1
+0.3
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