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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11420 and 11421 are separated by 699 nucleotides
11421 and 11422 are separated by 421 nucleotides
11422 and 11423 are separated by 860 nucleotides
11423 and 11424 are separated by 223 nucleotides
mRNA_3052: 11420 - KOG2404 Fumarate reductase, flavoprotein subunit, at 201,580 to 204,661
11420
mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205,361 to 206,848
11421
mRNA_3054: 11422 - Hypothetical Protein, at 207,270 to 207,722
11422
mRNA_3055: 11423 - Hypothetical Protein, at 208,583 to 210,185
11423
mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210,409 to 211,861
11424
Group
Condition
mRNA
_3052
mRNA
_3053
mRNA
_3054
mRNA
_3055
mRNA
_3056
11420
11421
11422
11423
11424
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.4
-0.2
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
-0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
-0.2
-0.3
-0.1
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.0
-0.7
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.4
-0.0
+0.1
auxotrophy
Dropout Complete
-0.1
-0.2
+0.2
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.4
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.4
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.2
-0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.1
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
+0.3
+0.1
+0.2
growth on ypd
YPD
-0.2
-0.1
+0.7
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.0
+0.2
+0.2
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.7
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.4
+0.7
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
+0.4
+0.3
+0.4
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