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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11421 and 11422 are separated by 421 nucleotides
11422 and 11423 are separated by 860 nucleotides
11423 and 11424 are separated by 223 nucleotides
11424 and 11425 are separated by 409 nucleotides
mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205,361 to 206,848
11421
mRNA_3054: 11422 - Hypothetical Protein, at 207,270 to 207,722
11422
mRNA_3055: 11423 - Hypothetical Protein, at 208,583 to 210,185
11423
mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210,409 to 211,861
11424
mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660
11425
Group
Condition
mRNA
_3053
mRNA
_3054
mRNA
_3055
mRNA
_3056
mRNA
_3057
11421
11422
11423
11424
11425
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
+0.4
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.7
+0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
-0.0
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.1
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose
-0.3
-0.1
+0.1
+0.0
+0.3
auxotrophy
Dropout Complete
-0.2
+0.2
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.4
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
+0.2
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.4
-0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.4
-0.2
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.4
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
-0.1
+0.5
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
+0.1
+0.3
-0.2
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.7
-0.2
-0.1
+0.0
growth on ypd
YPD
-0.1
+0.7
-0.1
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.7
+0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
+0.3
+0.4
-0.0
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