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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11429 and 11430 are separated by 350 nucleotides
11430 and 11431 are separated by 192 nucleotides
11431 and 11432 are separated by 82 nucleotides
11432 and 11433 are separated by 52 nucleotides
mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221,802 to 224,881
11429
mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225,232 to 227,100
11430
mRNA_3063: 11431 - Hypothetical Protein, at 227,293 to 229,777
11431
mRNA_3064: 11432 - K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1, at 229,860 to 230,752
11432
mRNA_3065: 11433 - Hypothetical Protein, at 230,805 to 232,101
11433
Group
Condition
mRNA
_3061
mRNA
_3062
mRNA
_3063
mRNA
_3064
mRNA
_3065
11429
11430
11431
11432
11433
auxotrophy
Dropout Complete
-0.0
-0.1
-0.0
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
-0.1
-0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.1
-0.5
-0.2
growth on ypd
YPD
+0.0
+0.0
-0.1
-0.7
+0.1
growth on oleic acid
YNB Glucose
-0.0
-0.2
-0.1
-0.2
+0.1
auxotrophy
YNB Glucose
+0.0
-0.1
+0.2
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-0.2
-0.5
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.0
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
-0.2
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.1
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.2
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
+0.2
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
-0.2
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
-0.2
+0.6
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
+0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.0
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.0
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
-0.2
+0.7
+0.4
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