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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11430 and 11431 are separated by 192 nucleotides
11431 and 11432 are separated by 82 nucleotides
11432 and 11433 are separated by 52 nucleotides
11433 and 11434 are separated by 294 nucleotides
mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225,232 to 227,100
11430
mRNA_3063: 11431 - Hypothetical Protein, at 227,293 to 229,777
11431
mRNA_3064: 11432 - K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1, at 229,860 to 230,752
11432
mRNA_3065: 11433 - Hypothetical Protein, at 230,805 to 232,101
11433
mRNA_3066: 11434 - K13449 PR1 pathogenesis-related protein 1, at 232,396 to 233,465
11434
Group
Condition
mRNA
_3062
mRNA
_3063
mRNA
_3064
mRNA
_3065
mRNA
_3066
11430
11431
11432
11433
11434
auxotrophy
Dropout Complete
-0.1
-0.0
-0.5
-0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.5
-0.2
-0.2
growth on ypd
YPD
+0.0
-0.1
-0.7
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.3
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
+0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-0.1
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
-0.5
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.4
-0.2
+0.5
auxotrophy
YNB Glucose
-0.1
+0.2
-0.3
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.1
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
-0.2
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
+0.1
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-0.0
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
+0.6
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
+0.7
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
+0.7
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
+0.5
+0.1
+0.6
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