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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11434 and 11435 are separated by 1813 nucleotides
11435 and 11436 are separated by 303 nucleotides
11436 and 11437 are separated by 215 nucleotides
11437 and 11438 are separated by 234 nucleotides
mRNA_3066: 11434 - K13449 PR1 pathogenesis-related protein 1, at 232,396 to 233,465
11434
mRNA_3067: 11435 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 235,279 to 236,676
11435
mRNA_3068: 11436 - K02434 gatB, PET112 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B, at 236,980 to 239,400
11436
mRNA_3069: 11437 - KOG2505 Ankyrin repeat protein, at 239,616 to 241,978
11437
mRNA_3070: 11438 - Hypothetical Protein, at 242,213 to 243,874
11438
Group
Condition
mRNA
_3066
mRNA
_3067
mRNA
_3068
mRNA
_3069
mRNA
_3070
11434
11435
11436
11437
11438
growth on ypd
YPD
-0.2
-0.1
-0.5
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.0
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.4
+0.4
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.0
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.0
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
-0.0
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.2
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.0
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.1
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.1
-0.2
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
+0.1
+0.2
+0.1
auxotrophy
Dropout Complete
-0.0
+0.0
+0.2
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.0
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose
+0.3
+0.1
+0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.1
-0.1
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.0
+0.2
+0.2
+0.2
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