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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11436 and 11437 are separated by 215 nucleotides
11437 and 11438 are separated by 234 nucleotides
11438 and 11439 are separated by 1703 nucleotides
11439 and 11440 are separated by 976 nucleotides
mRNA_3068: 11436 - K02434 gatB, PET112 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B, at 236,980 to 239,400
11436
mRNA_3069: 11437 - KOG2505 Ankyrin repeat protein, at 239,616 to 241,978
11437
mRNA_3070: 11438 - Hypothetical Protein, at 242,213 to 243,874
11438
mRNA_3071: 11439 - Hypothetical Protein, at 245,578 to 247,225
11439
mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247
11440
Group
Condition
mRNA
_3068
mRNA
_3069
mRNA
_3070
mRNA
_3071
mRNA
_3072
11436
11437
11438
11439
11440
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.1
-0.4
-0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.1
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
-0.3
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.1
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.0
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.3
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
-0.0
+0.1
+0.0
growth on ypd
YPD
-0.5
-0.0
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.5
-0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
+0.4
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.3
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.1
+0.1
+0.2
auxotrophy
YNB Glucose
+0.1
+0.2
+0.3
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
+0.2
+0.1
+0.1
auxotrophy
Dropout Complete
+0.2
+0.2
+0.3
-0.0
+0.2
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