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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11438 and 11439 are separated by 1703 nucleotides
11439 and 11440 are separated by 976 nucleotides
11440 and 11441 are separated by 153 nucleotides
11441 and 11442 are separated by 45 nucleotides
mRNA_3070: 11438 - Hypothetical Protein, at 242,213 to 243,874
11438
mRNA_3071: 11439 - Hypothetical Protein, at 245,578 to 247,225
11439
mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247
11440
mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249,401 to 250,160
11441
mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250,206 to 251,968
11442
Group
Condition
mRNA
_3070
mRNA
_3071
mRNA
_3072
mRNA
_3073
mRNA
_3074
11438
11439
11440
11441
11442
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
-0.4
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.5
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.0
-0.3
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.1
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.2
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.2
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.2
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.0
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
-0.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.2
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
+0.1
-0.2
+0.2
auxotrophy
Dropout Complete
+0.3
-0.0
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
-0.2
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-0.1
+0.0
+0.2
auxotrophy
YNB Glucose
+0.3
+0.2
+0.1
-0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.3
-0.0
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.1
+0.3
+0.1
+0.2
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