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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11440 and 11441 are separated by 153 nucleotides
11441 and 11442 are separated by 45 nucleotides
11442 and 11443 are separated by 218 nucleotides
11443 and 11444 are separated by 1326 nucleotides
mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247
11440
mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249,401 to 250,160
11441
mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250,206 to 251,968
11442
mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252,187 to 260,484
11443
mRNA_3076: 11444 - KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats, at 261,811 to 264,179
11444
Group
Condition
mRNA
_3072
mRNA
_3073
mRNA
_3074
mRNA
_3075
mRNA
_3076
11440
11441
11442
11443
11444
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
+0.2
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
+0.3
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
-0.0
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
-0.0
+0.2
growth on oleic acid
YNB Glucose
+0.2
-0.2
+0.1
+0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
-0.0
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
+0.1
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
+0.0
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.1
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
+0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.1
+0.2
+0.0
auxotrophy
Dropout Complete
+0.2
-0.1
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
+0.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.2
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
+0.5
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
+0.2
+0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.3
+0.1
+0.3
auxotrophy
YNB Glucose
+0.1
-0.0
+0.3
+0.1
+0.2
growth on ypd
YPD
+0.3
+0.1
+0.2
+0.1
+0.1
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