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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11443 and 11444 are separated by 1326 nucleotides
11444 and 11445 are separated by 29 nucleotides
11445 and 11446 are separated by 175 nucleotides
11446 and 11447 are separated by 384 nucleotides
mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252,187 to 260,484
11443
mRNA_3076: 11444 - KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats, at 261,811 to 264,179
11444
mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264,209 to 265,729
11445
mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265,905 to 270,528
11446
mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289
11447
Group
Condition
mRNA
_3075
mRNA
_3076
mRNA
_3077
mRNA
_3078
mRNA
_3079
11443
11444
11445
11446
11447
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-0.2
+0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
+0.0
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.0
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
+0.2
-0.0
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.2
-0.0
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.0
+0.0
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.1
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
+0.0
-0.1
+0.2
auxotrophy
Dropout Complete
+0.2
+0.1
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
-0.0
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose
+0.1
+0.2
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
+0.1
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
+0.1
+0.1
+0.2
growth on ypd
YPD
+0.1
+0.1
-0.0
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.5
+0.0
+0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.5
+0.0
+0.1
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