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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11445 and 11446 are separated by 175 nucleotides
11446 and 11447 are separated by 384 nucleotides
11447 and 11448 are separated by 272 nucleotides
11448 and 11449 are separated by 691 nucleotides
mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264,209 to 265,729
11445
mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265,905 to 270,528
11446
mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289
11447
mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087
11448
mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054
11449
Group
Condition
mRNA
_3077
mRNA
_3078
mRNA
_3079
mRNA
_3080
mRNA
_3081
11445
11446
11447
11448
11449
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
-0.6
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
-0.0
-0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.0
-0.3
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
-0.2
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.0
+0.2
-0.1
-0.0
auxotrophy
YNB Glucose
-0.1
-0.1
+0.2
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.2
+0.2
-0.1
auxotrophy
Dropout Complete
-0.1
-0.1
+0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
-0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.0
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.1
+0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.3
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
+0.2
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.2
+0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.0
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.0
+0.1
+0.3
-0.1
growth on ypd
YPD
-0.0
+0.1
+0.4
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
+0.1
+0.5
+0.3
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