Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 11447 and 11448 are separated by 272 nucleotides11448 and 11449 are separated by 691 nucleotides11449 and 11450 are separated by 386 nucleotides11450 and 11451 are separated by 2093 nucleotides mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450 mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865 11451
Group Condition mRNA_3079 mRNA_3080 mRNA_3081 mRNA_3082 mRNA_3083
11447 11448 11449 11450 11451
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 +0.2 -0.1 -0.7 +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.1 +0.1 -0.6 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 +0.1 +0.1 -0.4 -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.2 -0.0 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 -0.0 +0.0 -0.3 +0.0
growth on ricinoleic acid YNB Glucose -0.2 +0.3 +0.1 -0.5 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 +0.3 -0.1 -0.5 -0.0
growth on oleic acid YNB Oleic Acid -0.0 -0.3 -0.0 +0.2 -0.0
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.1 +0.1 -0.2 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 +0.2 -0.1 +0.1 -0.0
growth on oleic acid YNB Glucose +0.2 -0.1 -0.0 -0.0 -0.0
auxotrophy YNB Glucose +0.2 +0.2 +0.0 -0.2 -0.0
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.2 -0.1 -0.2 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.0 +0.0 +0.3 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.2 +0.2 -0.0 -0.1 +0.0
auxotrophy Dropout Complete +0.2 +0.3 -0.1 +0.1 -0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.0 +0.1 +0.3 +0.2 +0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.3 +0.3 +0.1 +0.4 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 +0.5 +0.3 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.4 +0.1 +0.1 -0.0
growth on ypd YPD +0.4 +0.2 +0.2 +0.1 +0.1
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