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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11447 and 11448 are separated by 272 nucleotides
11448 and 11449 are separated by 691 nucleotides
11449 and 11450 are separated by 386 nucleotides
11450 and 11451 are separated by 2093 nucleotides
mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289
11447
mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087
11448
mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054
11449
mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932
11450
mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865
11451
Group
Condition
mRNA
_3079
mRNA
_3080
mRNA
_3081
mRNA
_3082
mRNA
_3083
11447
11448
11449
11450
11451
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
-0.1
-0.7
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.1
-0.6
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.1
+0.1
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.0
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
+0.0
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
+0.1
-0.5
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.1
-0.5
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-0.0
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
-0.1
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.0
-0.0
-0.0
auxotrophy
YNB Glucose
+0.2
+0.2
+0.0
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.0
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.0
-0.1
+0.0
auxotrophy
Dropout Complete
+0.2
+0.3
-0.1
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+0.3
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
+0.1
+0.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.5
+0.3
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
+0.1
+0.1
-0.0
growth on ypd
YPD
+0.4
+0.2
+0.2
+0.1
+0.1
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