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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11450 and 11451 are separated by 2093 nucleotides
11451 and 11452 are separated by 123 nucleotides
11452 and 11453 are separated by 1055 nucleotides
11453 and 11454 are separated by 731 nucleotides
mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932
11450
mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865
11451
mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312
11452
mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217
11453
mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955
11454
Group
Condition
mRNA
_3082
mRNA
_3083
mRNA
_3084
mRNA
_3085
mRNA
_3086
11450
11451
11452
11453
11454
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
-0.4
-0.8
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.0
-0.1
-0.3
-0.3
auxotrophy
YNB Glucose
-0.2
-0.0
-0.4
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.0
+0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.1
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
-0.1
+0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.0
-0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
+0.0
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.1
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
-0.1
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.0
-0.3
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
-0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.1
-0.0
-0.2
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
+0.3
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-0.3
-0.2
+0.4
growth on oleic acid
YNB Glucose
-0.0
-0.0
-0.1
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
-0.2
+0.8
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.0
-0.3
+0.4
-0.3
growth on ypd
YPD
+0.1
+0.1
-0.5
+0.5
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
-0.2
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-0.2
+1.0
+0.0
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