Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 11450 and 11451 are separated by 2093 nucleotides11451 and 11452 are separated by 123 nucleotides11452 and 11453 are separated by 1055 nucleotides11453 and 11454 are separated by 731 nucleotides mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450 mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865 11451 mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312 11452 mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955 11454
Group Condition mRNA_3082 mRNA_3083 mRNA_3084 mRNA_3085 mRNA_3086
11450 11451 11452 11453 11454
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.0 -0.4 -0.8 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.6 -0.0 -0.1 -0.3 -0.3
auxotrophy YNB Glucose -0.2 -0.0 -0.4 -0.0 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.0 +0.2 -0.3 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.7 +0.1 +0.1 -0.0 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.3 -0.1 -0.1 +0.1 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 -0.0 -0.2 +0.2 -0.0
growth on ricinoleic acid YNB Glucose -0.5 -0.0 +0.0 +0.1 -0.2
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.1 -0.1 -0.2 -0.2
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.0 -0.1 -0.0 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.0 -0.3 +0.1 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.0 -0.1 +0.1 -0.1
auxotrophy Dropout Complete +0.1 -0.0 -0.2 +0.2 -0.4
facs on lipid accumulation Sorted High BODIPY Gate +0.2 +0.0 +0.3 -0.2 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.2 -0.3 -0.2 +0.4
growth on oleic acid YNB Glucose -0.0 -0.0 -0.1 +0.2 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.1 -0.2 +0.8 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.4 -0.0 -0.3 +0.4 -0.3
growth on ypd YPD +0.1 +0.1 -0.5 +0.5 +0.1
growth on oleic acid YNB Oleic Acid +0.2 -0.0 -0.2 +0.5 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 -0.0 -0.2 +1.0 +0.0
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