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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11451 and 11452 are separated by 123 nucleotides
11452 and 11453 are separated by 1055 nucleotides
11453 and 11454 are separated by 731 nucleotides
11454 and 11455 are separated by 596 nucleotides
mRNA_3083: 11451 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 281,026 to 282,865
11451
mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312
11452
mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217
11453
mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955
11454
mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289,552 to 290,619
11455
Group
Condition
mRNA
_3083
mRNA
_3084
mRNA
_3085
mRNA
_3086
mRNA
_3087
11451
11452
11453
11454
11455
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.4
-0.8
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.3
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.3
+0.4
-0.3
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
-0.2
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
-0.2
+0.4
-0.3
auxotrophy
YNB Glucose
-0.0
-0.4
-0.0
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.0
-0.4
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.2
-0.3
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
+0.1
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
+0.8
-0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.1
-0.1
-0.0
auxotrophy
Dropout Complete
-0.0
-0.2
+0.2
-0.4
+0.2
growth on ypd
YPD
+0.1
-0.5
+0.5
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-0.0
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
-0.1
+0.2
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.2
+0.2
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
+0.5
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
+1.0
+0.0
-0.2
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