Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11452 and 11453 are separated by 1055 nucleotides11453 and 11454 are separated by 731 nucleotides11454 and 11455 are separated by 596 nucleotides11455 and 11456 are separated by 192 nucleotides mRNA_3084: 11452 - Hypothetical Protein, at 282,989 to 283,312 11452 mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955 11454 mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289,552 to 290,619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290,812 to 293,862 11456
Group Condition mRNA_3084 mRNA_3085 mRNA_3086 mRNA_3087 mRNA_3088
11452 11453 11454 11455 11456
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 -0.8 -0.2 -0.4 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.3 -0.3 +0.0 -0.8
facs on lipid accumulation Sorted High BODIPY Gate +0.3 -0.2 -0.5 -0.4 -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.3 -0.3 -0.0 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.3 +0.4 -0.3 -0.6 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.2 +0.4 -0.3 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.1 -0.0 -0.2 -0.2
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.2 -0.2 -0.1 -0.0
growth on ypd YPD -0.5 +0.5 +0.1 -0.2 -0.3
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.0 -0.4 -0.0 +0.1
auxotrophy YNB Glucose -0.4 -0.0 -0.3 +0.2 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 -0.4 +0.2 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -0.0 -0.1 +0.1 -0.1
growth on oleic acid YNB Glucose -0.1 +0.2 +0.1 -0.0 -0.1
growth on ricinoleic acid YNB Glucose +0.0 +0.1 -0.2 +0.1 +0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.1 -0.1 -0.0 +0.2
auxotrophy Dropout Complete -0.2 +0.2 -0.4 +0.2 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.8 -0.1 -0.6 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.2 -0.0 +0.3 +0.1
growth on oleic acid YNB Oleic Acid -0.2 +0.5 -0.0 +0.1 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +1.0 +0.0 -0.2 +0.1
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