Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11453 and 11454 are separated by 731 nucleotides
11454 and 11455 are separated by 596 nucleotides
11455 and 11456 are separated by 192 nucleotides
11456 and 11457 overlap by 8 nucleotides
mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217
11453
mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955
11454
mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289,552 to 290,619
11455
mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290,812 to 293,862
11456
mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293,855 to 294,427
11457
Group
Condition
mRNA
_3085
mRNA
_3086
mRNA
_3087
mRNA
_3088
mRNA
_3089
11453
11454
11455
11456
11457
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.3
+0.0
-0.8
-1.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
-0.2
-0.4
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
-0.4
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
-0.3
-0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
+0.1
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.3
-0.6
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.1
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
-0.0
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.4
-0.0
+0.1
-0.0
growth on ypd
YPD
+0.5
+0.1
-0.2
-0.3
-0.3
auxotrophy
YNB Glucose
-0.0
-0.3
+0.2
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.1
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.4
+0.2
-0.1
+0.5
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.0
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.1
-0.6
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.0
+0.2
+0.5
auxotrophy
Dropout Complete
+0.2
-0.4
+0.2
+0.2
+0.4
growth on oleic acid
YNB Oleic Acid
+0.5
-0.0
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
+0.3
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.0
-0.2
+0.1
+0.2
remove
mRNA_3085
plot
remove
mRNA_3086
plot
remove
mRNA_3087
remove
mRNA_3088
plot
remove
mRNA_3089
plot