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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11457 and 11458 are separated by 498 nucleotides
11458 and 11459 overlap by 84 nucleotides
11459 and 11460 are separated by 614 nucleotides
11460 and 11461 are separated by 370 nucleotides
mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293,855 to 294,427
11457
mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294,926 to 296,826
11458
mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296,743 to 299,433
11459
mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300,048 to 303,992
11460
mRNA_3093: 11461 - Hypothetical Protein, at 304,363 to 305,282
11461
Group
Condition
mRNA
_3089
mRNA
_3090
mRNA
_3091
mRNA
_3092
mRNA
_3093
11457
11458
11459
11460
11461
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
+0.1
+0.1
+0.3
-0.0
growth on ypd
YPD
-0.3
-0.4
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.1
+0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
+0.3
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.0
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.2
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.0
-0.0
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.4
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.2
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-0.1
+0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.0
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.0
-0.1
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.4
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.3
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.3
-0.2
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
+0.1
+0.1
+0.0
auxotrophy
YNB Glucose
+0.0
+0.5
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
+0.5
+0.1
+0.1
auxotrophy
Dropout Complete
+0.4
+0.4
+0.3
-0.1
+0.1
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