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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11458 and 11459 overlap by 84 nucleotides
11459 and 11460 are separated by 614 nucleotides
11460 and 11461 are separated by 370 nucleotides
11461 and 11462 are separated by 328 nucleotides
mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294,926 to 296,826
11458
mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296,743 to 299,433
11459
mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300,048 to 303,992
11460
mRNA_3093: 11461 - Hypothetical Protein, at 304,363 to 305,282
11461
mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305,611 to 307,227
11462
Group
Condition
mRNA
_3090
mRNA
_3091
mRNA
_3092
mRNA
_3093
mRNA
_3094
11458
11459
11460
11461
11462
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.1
-0.0
-0.2
growth on ypd
YPD
-0.4
-0.1
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
+0.0
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.4
+0.1
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.1
-0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
-0.0
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.1
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.1
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.4
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.3
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.5
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose
+0.5
+0.3
+0.1
-0.0
-0.2
auxotrophy
Dropout Complete
+0.4
+0.3
-0.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.4
+0.0
-0.0
+0.1
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