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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11460 and 11461 are separated by 370 nucleotides
11461 and 11462 are separated by 328 nucleotides
11462 and 11463 are separated by 232 nucleotides
11463 and 11464 are separated by 251 nucleotides
mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300,048 to 303,992
11460
mRNA_3093: 11461 - Hypothetical Protein, at 304,363 to 305,282
11461
mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305,611 to 307,227
11462
mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307,460 to 310,020
11463
mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310,272 to 311,367
11464
Group
Condition
mRNA
_3092
mRNA
_3093
mRNA
_3094
mRNA
_3095
mRNA
_3096
11460
11461
11462
11463
11464
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-0.2
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.1
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.2
-0.0
-0.0
auxotrophy
Dropout Complete
-0.1
+0.1
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose
+0.1
-0.0
-0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.1
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.2
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.2
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.1
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.0
+0.1
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.0
-0.0
+0.1
growth on ypd
YPD
+0.1
+0.1
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
+0.0
-0.1
+0.2
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