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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11462 and 11463 are separated by 232 nucleotides
11463 and 11464 are separated by 251 nucleotides
11464 and 11465 are separated by 231 nucleotides
11465 and 11466 are separated by 198 nucleotides
mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305,611 to 307,227
11462
mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307,460 to 310,020
11463
mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310,272 to 311,367
11464
mRNA_3097: 11465 - K00591 COQ3 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase, at 311,599 to 312,739
11465
mRNA_3098: 11466 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 312,938 to 315,396
11466
Group
Condition
mRNA
_3094
mRNA
_3095
mRNA
_3096
mRNA
_3097
mRNA
_3098
11462
11463
11464
11465
11466
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.2
-0.3
-0.2
auxotrophy
YNB Glucose
-0.2
+0.1
-0.1
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
-0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.0
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.1
-0.4
-0.0
auxotrophy
Dropout Complete
-0.1
-0.1
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
+0.2
-0.3
+0.1
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.0
-0.4
+0.3
growth on ypd
YPD
-0.0
+0.1
+0.3
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.0
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.2
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.0
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
+0.1
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
+0.1
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
+0.2
+0.1
+0.4
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