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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11466 and 11467 are separated by 60 nucleotides
11467 and 11468 are separated by 2722 nucleotides
11468 and 11469 are separated by 2163 nucleotides
11469 and 11470 are separated by 222 nucleotides
mRNA_3098: 11466 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 312,938 to 315,396
11466
mRNA_3099: 11467 - Hypothetical Protein, at 315,457 to 316,238
11467
mRNA_3100: 11468 - Hypothetical Protein, at 318,961 to 319,575
11468
mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321,739 to 325,524
11469
mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243
11470
Group
Condition
mRNA
_3098
mRNA
_3099
mRNA
_3100
mRNA
_3101
mRNA
_3102
11466
11467
11468
11469
11470
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.8
-0.5
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.0
-0.1
-0.1
growth on ypd
YPD
-0.3
+0.3
-0.1
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.3
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-0.2
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-0.3
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
+0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.4
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.2
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.4
+0.2
+0.0
+0.1
auxotrophy
Dropout Complete
-0.1
+0.3
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose
-0.1
+0.4
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.6
+0.2
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
+0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.6
+0.0
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
-0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
+0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.6
+0.2
+0.0
-0.0
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