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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11468 and 11469 are separated by 2163 nucleotides
11469 and 11470 are separated by 222 nucleotides
11470 and 11471 are separated by 586 nucleotides
11471 and 11472 are separated by 565 nucleotides
mRNA_3100: 11468 - Hypothetical Protein, at 318,961 to 319,575
11468
mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321,739 to 325,524
11469
mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243
11470
mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328,830 to 331,254
11471
mRNA_3104: 11472 - HMMPfam-Uncharacterized conserved protein (DUF2156)-PF09924, at 331,820 to 333,279
11472
Group
Condition
mRNA
_3100
mRNA
_3101
mRNA
_3102
mRNA
_3103
mRNA
_3104
11468
11469
11470
11471
11472
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
-0.1
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
-0.2
+0.2
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.2
-0.1
-0.2
growth on ypd
YPD
-0.1
-0.1
-0.0
-0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.0
+0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.1
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
+0.0
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
-0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
-0.1
+0.1
+0.1
auxotrophy
YNB Glucose
+0.4
+0.0
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
+0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.0
+0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+0.1
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.1
+0.1
+0.2
auxotrophy
Dropout Complete
+0.2
+0.2
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-0.1
+0.1
+0.1
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