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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11469 and 11470 are separated by 222 nucleotides
11470 and 11471 are separated by 586 nucleotides
11471 and 11472 are separated by 565 nucleotides
11472 and 11473 are separated by 1214 nucleotides
mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321,739 to 325,524
11469
mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243
11470
mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328,830 to 331,254
11471
mRNA_3104: 11472 - HMMPfam-Uncharacterized conserved protein (DUF2156)-PF09924, at 331,820 to 333,279
11472
mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334,494 to 336,059
11473
Group
Condition
mRNA
_3101
mRNA
_3102
mRNA
_3103
mRNA
_3104
mRNA
_3105
11469
11470
11471
11472
11473
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.2
-0.2
-0.0
auxotrophy
YNB Glucose
+0.0
-0.1
-0.1
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.2
-0.1
-0.1
growth on ypd
YPD
-0.1
-0.0
-0.3
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
-0.1
-0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.0
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.0
+0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.2
-0.3
+0.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.1
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
+0.2
-0.1
auxotrophy
Dropout Complete
+0.2
-0.1
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.2
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
-0.2
+0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
+0.0
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.0
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.2
+0.1
-0.1
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