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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11470 and 11471 are separated by 586 nucleotides
11471 and 11472 are separated by 565 nucleotides
11472 and 11473 are separated by 1214 nucleotides
11473 and 11474 are separated by 151 nucleotides
mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325,747 to 328,243
11470
mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328,830 to 331,254
11471
mRNA_3104: 11472 - HMMPfam-Uncharacterized conserved protein (DUF2156)-PF09924, at 331,820 to 333,279
11472
mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334,494 to 336,059
11473
mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336,211 to 338,758
11474
Group
Condition
mRNA
_3102
mRNA
_3103
mRNA
_3104
mRNA
_3105
mRNA
_3106
11470
11471
11472
11473
11474
auxotrophy
YNB Glucose
-0.1
-0.1
+0.2
-0.5
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.2
-0.1
-0.1
-0.1
growth on ypd
YPD
-0.0
-0.3
+0.0
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.2
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.1
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
+0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.1
-0.2
+0.0
auxotrophy
Dropout Complete
-0.1
+0.1
+0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.0
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
+0.2
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
-0.3
+0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.2
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
+0.1
-0.4
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.2
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
+0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.0
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
-0.2
+0.4
+0.3
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