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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11473 and 11474 are separated by 151 nucleotides
11474 and 11475 are separated by 396 nucleotides
11475 and 11476 are separated by 111 nucleotides
11476 and 11477 are separated by 214 nucleotides
mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334,494 to 336,059
11473
mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336,211 to 338,758
11474
mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339,155 to 340,730
11475
mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340,842 to 344,399
11476
mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344,614 to 345,945
11477
Group
Condition
mRNA
_3105
mRNA
_3106
mRNA
_3107
mRNA
_3108
mRNA
_3109
11473
11474
11475
11476
11477
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.4
-2.0
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.0
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.4
+0.1
+0.4
growth on ypd
YPD
-0.1
-0.1
+0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
-0.4
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
+0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
-0.3
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
-0.0
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.0
+0.2
+0.4
auxotrophy
YNB Glucose
-0.5
-0.0
+0.9
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
+0.4
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
+0.0
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
+0.2
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
+0.8
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.8
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.3
+0.1
+0.1
+0.1
auxotrophy
Dropout Complete
-0.1
-0.1
+1.0
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.1
+0.3
+0.1
+0.3
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