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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11474 and 11475 are separated by 396 nucleotides
11475 and 11476 are separated by 111 nucleotides
11476 and 11477 are separated by 214 nucleotides
11477 and 11478 are separated by 153 nucleotides
mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336,211 to 338,758
11474
mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339,155 to 340,730
11475
mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340,842 to 344,399
11476
mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344,614 to 345,945
11477
mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346,099 to 349,205
11478
Group
Condition
mRNA
_3106
mRNA
_3107
mRNA
_3108
mRNA
_3109
mRNA
_3110
11474
11475
11476
11477
11478
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-2.0
-0.2
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
+0.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.4
+0.1
+0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
+0.1
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
-0.1
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
+0.1
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-0.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
+0.2
+0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.4
-0.1
+0.1
-0.0
growth on ypd
YPD
-0.1
+0.1
-0.1
+0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.1
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.0
+0.2
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
+0.0
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.8
+0.0
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.8
+0.1
-0.0
-0.0
auxotrophy
YNB Glucose
-0.0
+0.9
+0.0
+0.1
-0.0
auxotrophy
Dropout Complete
-0.1
+1.0
+0.0
+0.2
+0.0
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