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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11475 and 11476 are separated by 111 nucleotides
11476 and 11477 are separated by 214 nucleotides
11477 and 11478 are separated by 153 nucleotides
11478 and 11479 are separated by 276 nucleotides
mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339,155 to 340,730
11475
mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340,842 to 344,399
11476
mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344,614 to 345,945
11477
mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346,099 to 349,205
11478
mRNA_3111: 11479 - K09788 prpF 2-methylaconitate isomerase, at 349,482 to 350,899
11479
Group
Condition
mRNA
_3107
mRNA
_3108
mRNA
_3109
mRNA
_3110
mRNA
_3111
11475
11476
11477
11478
11479
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
-0.2
-0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
+0.3
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.1
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.4
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
+0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
+0.4
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.4
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
+0.3
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
+0.1
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
+0.1
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.0
-0.0
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.4
-0.0
-0.1
growth on ypd
YPD
+0.1
-0.1
+0.4
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.3
-0.0
+0.2
auxotrophy
YNB Glucose
+0.9
+0.0
+0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.1
-0.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.0
+0.1
-0.0
+0.1
auxotrophy
Dropout Complete
+1.0
+0.0
+0.2
+0.0
+0.2
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