Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11475 and 11476 are separated by 111 nucleotides11476 and 11477 are separated by 214 nucleotides11477 and 11478 are separated by 153 nucleotides11478 and 11479 are separated by 276 nucleotides mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339,155 to 340,730 11475 mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340,842 to 344,399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344,614 to 345,945 11477 mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346,099 to 349,205 11478 mRNA_3111: 11479 - K09788 prpF 2-methylaconitate isomerase, at 349,482 to 350,899 11479
Group Condition mRNA_3107 mRNA_3108 mRNA_3109 mRNA_3110 mRNA_3111
11475 11476 11477 11478 11479
ypd buoyancy 40 hrs No Buoyancy Separation -2.0 -0.2 -0.1 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 +0.1 +0.3 -0.3 -0.1
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.0 -0.1 -0.0 -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.0 -0.1 -0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.2 -0.1 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 +0.1 +0.4 -0.2 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 +0.2 +0.0 -0.1 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 +0.1 +0.4 -0.1 -0.1
growth on oleic acid YNB Glucose +0.1 -0.1 +0.1 -0.2 +0.1
growth on ricinoleic acid YNB Glucose -0.0 -0.1 +0.4 -0.2 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.1 +0.3 -0.2 -0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.1 +0.1 -0.1 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.4 -0.1 +0.1 -0.0 -0.1
growth on oleic acid YNB Oleic Acid +0.4 +0.0 -0.0 -0.0 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +0.2 +0.4 -0.0 -0.1
growth on ypd YPD +0.1 -0.1 +0.4 +0.1 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.1 +0.3 -0.0 +0.2
auxotrophy YNB Glucose +0.9 +0.0 +0.1 -0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.8 +0.1 -0.0 -0.0 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.8 +0.0 +0.1 -0.0 +0.1
auxotrophy Dropout Complete +1.0 +0.0 +0.2 +0.0 +0.2
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