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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11482 and 11483 are separated by 282 nucleotides
11483 and 11484 are separated by 88 nucleotides
11484 and 11485 are separated by 134 nucleotides
11485 and 11486 are separated by 581 nucleotides
mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354,324 to 355,899
11482
mRNA_3115: 11483 - Hypothetical Protein, at 356,182 to 356,910
11483
mRNA_3116: 11484 - BLAST Pogo transposable element [Larimichthys crocea], at 356,999 to 357,616
11484
mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357,751 to 358,834
11485
mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359,416 to 362,125
11486
Group
Condition
mRNA
_3114
mRNA
_3115
mRNA
_3116
mRNA
_3117
mRNA
_3118
11482
11483
11484
11485
11486
growth on ypd
YPD
-0.2
+0.2
-0.4
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.1
+0.5
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
-0.2
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.0
-0.1
+0.0
auxotrophy
Dropout Complete
-0.5
+0.3
+0.5
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.1
+0.4
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose
-0.5
+0.5
+0.4
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.4
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.3
+0.3
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.0
-0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.9
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.3
+0.5
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.6
+0.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
+0.0
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
-0.0
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.5
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.1
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.2
+0.6
+0.2
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
+0.1
+0.2
-0.2
+0.3
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