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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11485 and 11486 are separated by 581 nucleotides
11486 and 11487 are separated by 659 nucleotides
11487 and 11488 are separated by 332 nucleotides
11488 and 11489 are separated by 9 nucleotides
mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357,751 to 358,834
11485
mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359,416 to 362,125
11486
mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362,785 to 367,104
11487
mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368
11488
mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678
11489
Group
Condition
mRNA
_3117
mRNA
_3118
mRNA
_3119
mRNA
_3120
mRNA
_3121
11485
11486
11487
11488
11489
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
-0.2
-1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
+0.1
-0.2
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+0.3
-0.0
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
-0.2
-0.3
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.1
-0.5
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
-0.0
-0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.1
+0.3
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.0
+0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.0
+0.3
-0.7
growth on oleic acid
YNB Glucose
+0.2
-0.0
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
+0.0
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.0
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
+0.0
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.0
-0.1
+0.4
auxotrophy
Dropout Complete
-0.1
-0.2
+0.1
-0.1
+0.7
auxotrophy
YNB Glucose
+0.1
-0.2
-0.1
-0.1
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-0.1
-0.2
+1.3
growth on ypd
YPD
-0.1
-0.0
-0.0
-0.1
+1.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.1
-0.1
+1.3
growth on ricinoleic acid
YNB Glucose
+0.5
+0.1
-0.1
+0.1
+0.4
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