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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11487 and 11488 are separated by 332 nucleotides
11488 and 11489 are separated by 9 nucleotides
11489 and 11490 are separated by 520 nucleotides
11490 and 11491 are separated by 122 nucleotides
mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362,785 to 367,104
11487
mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368
11488
mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678
11489
mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731
11490
mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371,854 to 373,401
11491
Group
Condition
mRNA
_3119
mRNA
_3120
mRNA
_3121
mRNA
_3122
mRNA
_3123
11487
11488
11489
11490
11491
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
-1.3
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-1.4
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
-0.5
-0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
-0.6
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.8
-0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
-0.8
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.3
-0.7
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.4
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.5
+0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
-0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.1
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.0
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
+0.4
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.0
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.4
-0.0
+0.2
auxotrophy
YNB Glucose
-0.1
-0.1
+0.7
+0.1
+0.1
auxotrophy
Dropout Complete
+0.1
-0.1
+0.7
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+1.3
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+1.3
+0.2
-0.0
growth on ypd
YPD
-0.0
-0.1
+1.3
+0.7
-0.1
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