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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11489 and 11490 are separated by 520 nucleotides
11490 and 11491 are separated by 122 nucleotides
11491 and 11492 are separated by 156 nucleotides
11492 and 11493 are separated by 536 nucleotides
mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678
11489
mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731
11490
mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371,854 to 373,401
11491
mRNA_3124: 11492 - K04079 HSP90A, htpG molecular chaperone HtpG, at 373,558 to 376,751
11492
mRNA_3125: 11493 - K08145 SLC2A8, GLUT8 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8, at 377,288 to 379,485
11493
Group
Condition
mRNA
_3121
mRNA
_3122
mRNA
_3123
mRNA
_3124
mRNA
_3125
11489
11490
11491
11492
11493
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.3
+0.0
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.4
+0.1
+0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
-0.2
+0.1
-0.1
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.1
+0.0
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.3
+0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.2
+0.0
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.0
-0.1
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
+0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.1
+0.0
+0.0
+0.4
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.0
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.0
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.1
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.4
-0.0
+0.2
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
+0.3
+0.0
+0.6
auxotrophy
YNB Glucose
+0.7
+0.1
+0.1
-0.1
+0.1
auxotrophy
Dropout Complete
+0.7
+0.4
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.3
+0.2
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.3
+0.2
-0.0
-0.0
-0.2
growth on ypd
YPD
+1.3
+0.7
-0.1
-0.1
-0.3
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