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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11493 and 11494 are separated by 1176 nucleotides
11494 and 11495 are separated by 27 nucleotides
11495 and 11496 are separated by 89 nucleotides
11496 and 11497 are separated by 227 nucleotides
mRNA_3125: 11493 - K08145 SLC2A8, GLUT8 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8, at 377,288 to 379,485
11493
mRNA_3126: 11494 - KOG0019 Molecular chaperone (HSP90 family), at 380,662 to 381,306
11494
mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381,334 to 384,253
11495
mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384,343 to 385,202
11496
mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385,430 to 386,354
11497
Group
Condition
mRNA
_3125
mRNA
_3126
mRNA
_3127
mRNA
_3128
mRNA
_3129
11493
11494
11495
11496
11497
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
-0.2
-0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
+0.1
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.2
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.2
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.5
-0.0
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
+0.0
+0.0
-0.2
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
-0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.1
+0.0
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.1
+0.1
-0.2
auxotrophy
YNB Glucose
+0.1
-0.1
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.1
+0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
-0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
-0.0
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.0
+0.3
+0.0
growth on ypd
YPD
-0.3
+0.3
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.0
-0.1
+0.3
+0.0
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