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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11497 and 11498 are separated by 1086 nucleotides
11498 and 11499 are separated by 306 nucleotides
11499 and 11500 are separated by 160 nucleotides
11500 and 11501 are separated by 168 nucleotides
mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385,430 to 386,354
11497
mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387,441 to 391,334
11498
mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391,641 to 394,728
11499
mRNA_3132: 11500 - Hypothetical Protein, at 394,889 to 395,179
11500
mRNA_3133: 11501 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 395,348 to 397,742
11501
Group
Condition
mRNA
_3129
mRNA
_3130
mRNA
_3131
mRNA
_3132
mRNA
_3133
11497
11498
11499
11500
11501
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.6
-0.8
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
-0.1
-0.8
+0.4
auxotrophy
Dropout Complete
-0.1
-0.1
-0.2
-0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
-0.2
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.3
-0.9
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
-0.3
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
-0.2
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.2
-0.2
-0.2
auxotrophy
YNB Glucose
+0.2
-0.1
-0.0
-0.8
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
-0.1
-0.4
+0.4
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.1
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.4
+0.9
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.1
+0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
+0.1
+0.8
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
+0.9
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
+0.1
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
+0.2
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
-0.4
+1.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
-0.1
+0.8
+0.3
growth on ypd
YPD
+0.2
+0.2
-0.0
+0.5
+0.2
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