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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11498 and 11499 are separated by 306 nucleotides
11499 and 11500 are separated by 160 nucleotides
11500 and 11501 are separated by 168 nucleotides
11501 and 11502 are separated by 75 nucleotides
mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387,441 to 391,334
11498
mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391,641 to 394,728
11499
mRNA_3132: 11500 - Hypothetical Protein, at 394,889 to 395,179
11500
mRNA_3133: 11501 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 395,348 to 397,742
11501
mRNA_3134: 11502 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 397,818 to 398,852
11502
Group
Condition
mRNA
_3130
mRNA
_3131
mRNA
_3132
mRNA
_3133
mRNA
_3134
11498
11499
11500
11501
11502
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.6
-0.8
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
-0.2
-0.7
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
-0.9
+0.5
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
-0.8
+0.4
+0.0
auxotrophy
YNB Glucose
-0.1
-0.0
-0.8
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.2
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.0
+0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.2
-0.3
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.4
+0.4
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.0
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
+0.9
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
+0.8
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.3
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.6
-0.1
+0.1
growth on ypd
YPD
+0.2
-0.0
+0.5
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.9
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.4
+1.0
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
+0.7
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.8
+0.3
-0.1
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