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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11503 and 11504 are separated by 1189 nucleotides
11504 and 11505 are separated by 482 nucleotides
11505 and 11506 are separated by 199 nucleotides
11506 and 11507 are separated by 240 nucleotides
mRNA_3135: 11503 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 399,522 to 400,301
11503
mRNA_3136: 11504 - KOG2615 Permease of the major facilitator superfamily, at 401,491 to 407,249
11504
mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407,732 to 408,630
11505
mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408,830 to 410,030
11506
mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410,271 to 410,837
11507
Group
Condition
mRNA
_3135
mRNA
_3136
mRNA
_3137
mRNA
_3138
mRNA
_3139
11503
11504
11505
11506
11507
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.2
+0.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.6
-0.2
-0.2
auxotrophy
Dropout Complete
+0.1
-0.1
-0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.2
+0.0
-0.3
auxotrophy
YNB Glucose
+0.4
-0.1
-0.3
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.5
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.0
-0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
+0.1
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.1
-0.2
-0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.0
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.0
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+1.0
+0.1
-0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
-0.0
-0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
+0.1
-0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
-0.2
+0.2
+0.4
growth on ypd
YPD
+0.5
+0.1
+0.3
-0.2
+0.3
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