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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11505 and 11506 are separated by 199 nucleotides
11506 and 11507 are separated by 240 nucleotides
11507 and 11508 are separated by 509 nucleotides
11508 and 11509 are separated by 63 nucleotides
mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407,732 to 408,630
11505
mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408,830 to 410,030
11506
mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410,271 to 410,837
11507
mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411,347 to 412,227
11508
mRNA_3141: 11509 - HMMPfam-Proline-rich nuclear receptor coactivator-PF15365, at 412,291 to 413,595
11509
Group
Condition
mRNA
_3137
mRNA
_3138
mRNA
_3139
mRNA
_3140
mRNA
_3141
11505
11506
11507
11508
11509
growth on oleic acid
YNB Oleic Acid
-0.6
-0.2
-0.2
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
+0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
-0.0
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.0
+0.0
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
+0.1
-0.0
-0.0
auxotrophy
Dropout Complete
-0.3
-0.1
-0.1
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.0
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
+0.2
-0.1
-0.1
auxotrophy
YNB Glucose
-0.3
-0.1
-0.3
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.0
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
-0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
+0.4
+0.0
+0.2
growth on ypd
YPD
+0.3
-0.2
+0.3
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
+0.5
-0.1
+0.3
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