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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11507 and 11508 are separated by 509 nucleotides
11508 and 11509 are separated by 63 nucleotides
11509 and 11510 are separated by 1045 nucleotides
11510 and 11511 are separated by 81 nucleotides
mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410,271 to 410,837
11507
mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411,347 to 412,227
11508
mRNA_3141: 11509 - HMMPfam-Proline-rich nuclear receptor coactivator-PF15365, at 412,291 to 413,595
11509
mRNA_3142: 11510 - K14663 NTA1 protein N-terminal amidase, at 414,641 to 415,857
11510
mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415,939 to 417,358
11511
Group
Condition
mRNA
_3139
mRNA
_3140
mRNA
_3141
mRNA
_3142
mRNA
_3143
11507
11508
11509
11510
11511
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
-0.2
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
-0.1
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.2
-0.0
-0.2
growth on oleic acid
YNB Glucose
-0.0
-0.1
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
+0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.1
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
+0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.1
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.1
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.0
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
+0.1
+0.1
-0.3
auxotrophy
Dropout Complete
-0.1
+0.2
+0.0
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
+0.3
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
+0.2
-0.1
-0.1
auxotrophy
YNB Glucose
-0.3
+0.3
+0.2
+0.2
+0.1
growth on ypd
YPD
+0.3
-0.0
+0.3
+0.0
-0.0
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