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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11512 and 11513 are separated by 996 nucleotides
11513 and 11514 are separated by 138 nucleotides
11514 and 11515 are separated by 347 nucleotides
11515 and 11516 are separated by 928 nucleotides
mRNA_3144: 11512 - Hypothetical Protein, at 417,526 to 421,368
11512
mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422,365 to 423,654
11513
mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423,793 to 427,312
11514
mRNA_3147: 11515 - Hypothetical Protein, at 427,660 to 428,214
11515
mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429,143 to 430,117
11516
Group
Condition
mRNA
_3144
mRNA
_3145
mRNA
_3146
mRNA
_3147
mRNA
_3148
11512
11513
11514
11515
11516
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.1
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.2
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
+0.1
-0.7
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.3
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.0
-0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.1
+0.2
-0.5
auxotrophy
Dropout Complete
+0.1
-0.3
-0.1
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.1
-0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.0
-0.2
+0.2
auxotrophy
YNB Glucose
+0.0
-0.2
+0.2
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
+0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.0
-0.1
+0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.0
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
+0.4
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.2
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
+0.2
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
+0.4
+0.2
growth on ypd
YPD
+0.2
-0.0
+0.3
+0.1
+0.1
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