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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11513 and 11514 are separated by 138 nucleotides
11514 and 11515 are separated by 347 nucleotides
11515 and 11516 are separated by 928 nucleotides
11516 and 11517 are separated by 769 nucleotides
mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422,365 to 423,654
11513
mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423,793 to 427,312
11514
mRNA_3147: 11515 - Hypothetical Protein, at 427,660 to 428,214
11515
mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429,143 to 430,117
11516
mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430,887 to 434,419
11517
Group
Condition
mRNA
_3145
mRNA
_3146
mRNA
_3147
mRNA
_3148
mRNA
_3149
11513
11514
11515
11516
11517
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.6
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-0.2
-0.3
-0.2
auxotrophy
Dropout Complete
-0.3
-0.1
-0.6
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.7
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-0.6
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.5
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.0
+0.1
-0.0
auxotrophy
YNB Glucose
-0.2
+0.2
-0.4
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.2
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.1
+0.2
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.3
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
-0.1
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.4
-0.2
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
-0.2
+0.3
-0.0
growth on ypd
YPD
-0.0
+0.3
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
-0.2
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.4
+0.2
-0.1
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