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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11515 and 11516 are separated by 928 nucleotides
11516 and 11517 are separated by 769 nucleotides
11517 and 11518 are separated by 610 nucleotides
11518 and 11519 are separated by 159 nucleotides
mRNA_3147: 11515 - Hypothetical Protein, at 427,660 to 428,214
11515
mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429,143 to 430,117
11516
mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430,887 to 434,419
11517
mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435,030 to 436,321
11518
mRNA_3151: 11519 - Hypothetical Protein, at 436,481 to 438,109
11519
Group
Condition
mRNA
_3147
mRNA
_3148
mRNA
_3149
mRNA
_3150
mRNA
_3151
11515
11516
11517
11518
11519
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.0
+0.0
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.6
-0.2
-0.1
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.6
-0.1
-0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.1
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.5
+0.1
-0.2
-0.1
auxotrophy
Dropout Complete
-0.6
+0.3
-0.1
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.3
+0.2
-0.1
auxotrophy
YNB Glucose
-0.4
+0.2
-0.2
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.0
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
-0.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.1
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
-0.2
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.1
-0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.0
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
+0.0
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.1
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
+0.1
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
-0.1
+0.1
-0.0
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