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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11517 and 11518 are separated by 610 nucleotides
11518 and 11519 are separated by 159 nucleotides
11519 and 11520 are separated by 670 nucleotides
11520 and 11521 are separated by 230 nucleotides
mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430,887 to 434,419
11517
mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435,030 to 436,321
11518
mRNA_3151: 11519 - Hypothetical Protein, at 436,481 to 438,109
11519
mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438,780 to 439,151
11520
mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661
11521
Group
Condition
mRNA
_3149
mRNA
_3150
mRNA
_3151
mRNA
_3152
mRNA
_3153
11517
11518
11519
11520
11521
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.1
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.0
+0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
-0.1
-0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
+0.0
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
-0.2
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.0
+0.5
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
+0.0
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.1
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
-0.0
+0.1
+0.0
auxotrophy
YNB Glucose
-0.2
+0.3
-0.1
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.0
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.0
+0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
+0.0
+0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.1
+0.6
-0.3
auxotrophy
Dropout Complete
-0.1
+0.2
-0.0
-0.1
+0.2
growth on ypd
YPD
-0.1
+0.1
+0.1
+0.2
-0.0
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