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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11520 and 11521 are separated by 230 nucleotides
11521 and 11522 are separated by 295 nucleotides
11522 and 11523 are separated by 1324 nucleotides
11523 and 11524 are separated by 619 nucleotides
mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438,780 to 439,151
11520
mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661
11521
mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440,957 to 442,475
11522
mRNA_3155: 11523 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550, at 443,800 to 447,457
11523
mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448,077 to 450,028
11524
Group
Condition
mRNA
_3152
mRNA
_3153
mRNA
_3154
mRNA
_3155
mRNA
_3156
11520
11521
11522
11523
11524
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
-0.4
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.8
-0.5
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
-0.3
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.4
+0.2
+0.2
-0.3
growth on oleic acid
YNB Glucose
+0.0
-0.3
-0.1
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.6
-0.1
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.3
+0.2
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
+0.3
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose
-0.0
-0.1
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.5
-0.3
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.0
+0.0
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
+0.1
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
-0.0
+0.1
-0.2
growth on ypd
YPD
+0.2
-0.0
-0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.5
+0.3
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.1
+0.0
+0.2
auxotrophy
Dropout Complete
-0.1
+0.2
+0.0
+0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.1
+0.3
+0.1
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