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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11523 and 11524 are separated by 619 nucleotides
11524 and 11525 are separated by 97 nucleotides
11525 and 11526 are separated by 338 nucleotides
11526 and 11527 are separated by 67 nucleotides
mRNA_3155: 11523 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550, at 443,800 to 447,457
11523
mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448,077 to 450,028
11524
mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450,126 to 451,000
11525
mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451,339 to 452,325
11526
mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452,393 to 454,134
11527
Group
Condition
mRNA
_3155
mRNA
_3156
mRNA
_3157
mRNA
_3158
mRNA
_3159
11523
11524
11525
11526
11527
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
-0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.2
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-0.1
+0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
+0.3
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
-0.3
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.3
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.4
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
-0.1
+0.0
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.1
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.1
-0.0
-0.0
growth on ypd
YPD
+0.0
-0.0
+0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
-0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
+0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-0.0
+0.2
-0.0
auxotrophy
Dropout Complete
+0.3
-0.0
+0.3
-0.0
-0.0
auxotrophy
YNB Glucose
+0.1
+0.1
+0.5
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.4
+0.1
+0.0
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