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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11525 and 11526 are separated by 338 nucleotides
11526 and 11527 are separated by 67 nucleotides
11527 and 11528 are separated by 795 nucleotides
11528 and 11529 are separated by 243 nucleotides
mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450,126 to 451,000
11525
mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451,339 to 452,325
11526
mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452,393 to 454,134
11527
mRNA_3160: 11528 - Hypothetical Protein, at 454,930 to 455,731
11528
mRNA_3161: 11529 - SUPERFAMILY--SSF49899, at 455,975 to 458,012
11529
Group
Condition
mRNA
_3157
mRNA
_3158
mRNA
_3159
mRNA
_3160
mRNA
_3161
11525
11526
11527
11528
11529
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.0
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.1
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
-0.0
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.5
-0.1
-0.2
N.D.
N.D.
growth on ypd
YPD
+0.3
+0.1
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
+0.0
N.D.
N.D.
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