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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11538 and 11539 are separated by 847 nucleotides
11539 and 11540 are separated by 562 nucleotides
11540 and 11541 are separated by 249 nucleotides
11541 and 11542 are separated by 481 nucleotides
mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237
11538
mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4,085 to 5,766
11539
mRNA_3172: 11540 - Hypothetical Protein, at 6,329 to 7,697
11540
mRNA_3173: 11541 - K09497 CCT5 T-complex protein 1 subunit epsilon, at 7,947 to 10,272
11541
mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10,754 to 11,960
11542
Group
Condition
mRNA
_3170
mRNA
_3171
mRNA
_3172
mRNA
_3173
mRNA
_3174
11538
11539
11540
11541
11542
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.5
-0.9
-0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.9
-1.0
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-1.0
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.5
-0.4
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.4
-0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.5
-0.3
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.5
-0.1
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.5
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.5
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.0
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.2
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.1
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.4
N.D.
N.D.
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