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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11546 and 11547 are separated by 243 nucleotides
11547 and 11548 are separated by 795 nucleotides
11548 and 11549 are separated by 332 nucleotides
11549 and 11550 are separated by 476 nucleotides
mRNA_3178: 11546 - KOG4561 Uncharacterized conserved protein, contains TBC domain, at 25,091 to 26,696
11546
mRNA_3179: 11547 - Hypothetical Protein, at 26,940 to 28,412
11547
mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29,208 to 30,655
11548
mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30,988 to 32,695
11549
mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33,172 to 34,723
11550
Group
Condition
mRNA
_3178
mRNA
_3179
mRNA
_3180
mRNA
_3181
mRNA
_3182
11546
11547
11548
11549
11550
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.3
-0.0
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
N.D.
+0.2
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.0
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.3
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.2
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.1
+0.1
+0.0
growth on ypd
YPD
+0.4
N.D.
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose
+0.3
N.D.
-0.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
+0.4
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-0.1
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.1
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.3
+0.2
+0.0
auxotrophy
Dropout Complete
+0.1
N.D.
+0.2
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.4
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
+0.2
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
+0.3
+0.3
+0.1
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