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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11548 and 11549 are separated by 332 nucleotides
11549 and 11550 are separated by 476 nucleotides
11550 and 11551 are separated by 231 nucleotides
11551 and 11552 are separated by 956 nucleotides
mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29,208 to 30,655
11548
mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30,988 to 32,695
11549
mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33,172 to 34,723
11550
mRNA_3183: 11551 - HMMPfam-Cohesin loading factor-PF10345, at 34,955 to 37,755
11551
mRNA_3184: 11552 - K13220 WBP4, FBP21 WW domain-binding protein 4, at 38,712 to 39,951
11552
Group
Condition
mRNA
_3180
mRNA
_3181
mRNA
_3182
mRNA
_3183
mRNA
_3184
11548
11549
11550
11551
11552
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.0
-0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
+0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.1
-0.1
N.D.
N.D.
growth on ypd
YPD
-0.0
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
-0.0
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.5
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.4
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.2
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
+0.5
+0.1
N.D.
N.D.
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