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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11553 and 11554 are separated by 92 nucleotides
11554 and 11555 are separated by 444 nucleotides
11555 and 11556 are separated by 271 nucleotides
11556 and 11557 are separated by 829 nucleotides
mRNA_3185: 11553 - KOG1577 Aldo/keto reductase family proteins, at 40,241 to 41,550
11553
mRNA_3186: 11554 - KOG4444 Peroxisomal assembly protein PEX3, at 41,643 to 43,993
11554
mRNA_3187: 11555 - BLAST Protein disulfide-isomerase erp38 [Hypsizygus marmoreus], at 44,438 to 45,168
11555
mRNA_3188: 11556 - Hypothetical Protein, at 45,440 to 45,769
11556
mRNA_3189: 11557 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 46,599 to 47,566
11557
Group
Condition
mRNA
_3185
mRNA
_3186
mRNA
_3187
mRNA
_3188
mRNA
_3189
11553
11554
11555
11556
11557
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.7
-1.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.8
-0.1
-0.6
auxotrophy
Dropout Complete
+0.2
N.D.
-0.6
-0.7
+0.0
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.5
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.2
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.1
-0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.0
-0.5
+0.0
auxotrophy
YNB Glucose
+0.2
N.D.
-0.1
-0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-1.0
-0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.6
-0.8
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.2
-0.4
-0.2
growth on ypd
YPD
+0.0
N.D.
-0.6
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.4
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.5
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.2
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.6
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.4
+0.1
+0.3
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