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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11555 and 11556 are separated by 271 nucleotides
11556 and 11557 are separated by 829 nucleotides
11557 and 11558 are separated by 407 nucleotides
11558 and 11559 are separated by 110 nucleotides
mRNA_3187: 11555 - BLAST Protein disulfide-isomerase erp38 [Hypsizygus marmoreus], at 44,438 to 45,168
11555
mRNA_3188: 11556 - Hypothetical Protein, at 45,440 to 45,769
11556
mRNA_3189: 11557 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 46,599 to 47,566
11557
mRNA_3190: 11558 - KOG2427 Uncharacterized conserved protein, at 47,974 to 50,099
11558
mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50,210 to 52,668
11559
Group
Condition
mRNA
_3187
mRNA
_3188
mRNA
_3189
mRNA
_3190
mRNA
_3191
11555
11556
11557
11558
11559
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-1.4
-0.0
+0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
-0.6
-0.2
-0.2
auxotrophy
Dropout Complete
-0.6
-0.7
+0.0
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.1
+0.5
-0.4
+0.2
growth on oleic acid
YNB Oleic Acid
-0.5
-0.1
-0.1
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.5
+0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
-0.2
-0.2
+0.4
auxotrophy
YNB Glucose
-0.1
-0.5
-0.1
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.8
-0.1
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.5
+0.0
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.4
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.0
-0.2
+0.3
growth on ypd
YPD
-0.6
+0.6
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.3
-0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
+0.3
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.4
+0.0
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.2
+0.0
+0.1
+0.2
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