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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11557 and 11558 are separated by 407 nucleotides
11558 and 11559 are separated by 110 nucleotides
11559 and 11560 are separated by 400 nucleotides
11560 and 11561 are separated by 270 nucleotides
mRNA_3189: 11557 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 46,599 to 47,566
11557
mRNA_3190: 11558 - KOG2427 Uncharacterized conserved protein, at 47,974 to 50,099
11558
mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50,210 to 52,668
11559
mRNA_3192: 11560 - HMMPfam-Hypothetical protein FLILHELTA-PF10306, at 53,069 to 53,726
11560
mRNA_3193: 11561 - K13116 DDX41, ABS ATP-dependent RNA helicase DDX41, at 53,997 to 56,662
11561
Group
Condition
mRNA
_3189
mRNA
_3190
mRNA
_3191
mRNA
_3192
mRNA
_3193
11557
11558
11559
11560
11561
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.2
-0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
-0.0
-0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
-0.1
-0.7
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.0
-0.0
N.D.
auxotrophy
YNB Glucose
-0.1
-0.1
+0.3
-0.0
N.D.
auxotrophy
Dropout Complete
+0.0
-0.2
-0.1
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
-0.4
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
+0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
+0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
+0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.4
+0.2
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.2
+0.1
N.D.
growth on ypd
YPD
-0.1
+0.1
+0.1
+1.1
N.D.
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